This recipe for Paleo Chocolate Chip Cookies is my go-to cookie recipe! No one believes these cookies are gluten-free, grain-free, paleo, and refined sugar-free! This is one of my most popular recipes. You can easily make the cookies vegan.

When anyone asks me which recipe from my website they should try, one recipe comes to mind. It’s the same recipe my boyfriend begs me to make almost nightly, partially so he can eat the dough and partially so he can devour the warm cookie. Any guesses?
These paleo chocolate chip cookies are the BOMB! Not only are they one of my favorite recipes, but they’re also one of your, the readers, favorite recipes on the site. You guys seriously LOVE this one, and I don’t blame you. They’re so good. Obviously, all of these gluten-free cookies and vegan cookie recipes are also favorites, but this one is such a winner!
I hear all the time how you guys “tricked” your family and friends into believing they were “regular” cookies and were met with disbelief upon telling them these cookies were free of gluten, dairy, and refined sugars.

Let’s talk about making these irresistible Paleo Chocolate Chip Cookies!
One of my favorite descriptions of these cookies comes from my college friend and roommate, Mariah, right after I first developed this recipe in 2014. She does not seek out healthy, gluten-free desserts, Paleo, or any other things that these cookies are; she just cares that they’re delicious. This is what she thinks about these cookies:
“Once you get past the crispy exterior, it’s so chewy and moist and wonderful. And OMG the chocolate chunks…they are like fudge put in cookie form. I want these always and forever. They’re little pillows of happiness.”

This is the common reaction to these paleo chocolate chip cookies. To develop this recipe, I took the traditional butter-and-flour chocolate chip cookie recipe I had spent years developing and switched out the key ingredients with paleo counterparts. Goodbye went the butter in favor of coconut oil, and coconut sugar instead of brown and white sugars.
I loved how much puffier the coconut oil cookies were than the ones I made using butter! Coconut oil was a definite success. I also tested the recipe using a flax egg to keep them vegan, and the recipe turned out just as scrumptious. In fact, I normally use a flax egg when making this recipe so that I can eat the dough.
What you need to make gluten-free vegan chocolate chip cookies

Coconut Oil: You can also use butter or vegan butter. Make sure it has a soft texture to help it incorporate most easily with the sugar.
Coconut Sugar: I’ve also used date sugar with great success! If you don’t need these cookies to be paleo, you can substitute half white sugar and half brown sugar as well.
Flax Egg or Regular Egg: I make flax eggs with 1 tablespoon flax meal and 2.5 tablespoons water. Whisk together and let gel for 5 minutes before using. This keeps them vegan! A regular egg also works.
Vanilla Extract: a must in all baked goods!
Almond Flour: I prefer to use blanched almond flour in these cookies. They turn out best with almond flour. You can try different gluten-free flours at your own risk, but the amount may need to change depending on their absorbency.
Sea Salt & Baking Soda: These give flavor and lift to the cookies.
Chocolate: I love using a chopped chocolate bar, but good quality dark chocolate chips work great too.

How to make the best gluten-free chocolate chip cookies
Cream the coconut oil and coconut sugar together in a mixing bowl. The coconut oil should be the consistency of softened butter.


Once mixed, add in the flax eggs and vanilla extract. Stir until completely incorporated.


Add in the baking soda, salt, and blanched almond flour. Mix until completely mixed in.



Mix in the chocolate! Refrigerate the dough and then bake.

These Paleo Chocolate Chip Cookies just might be one of the best chocolate chip cookies you’ve ever had, paleo or not!
Tips and Tricks for the Best Cookies EVER:
- Use high-quality chopped dark chocolate, which is always better than chocolate chips. It melts better because the wax in chocolate chips prevents them from getting gooey. And we all know chocolate chip cookies need to be melty and gooey!
- Let them chill! You could skip the chill if you need cookies ASAP, and I’ve done that before, but the cookies are even better after refrigeration for at least an hour. The chill helps the cookies stay thick and allows the flavors to develop.
- Use a flax egg. This will keep the recipe vegan, and you can eat all the dough you want without eggs.
If soft, thick, just-a-little-doughy-in-the-middle, crispy-edged chocolate chunk-loaded cookies are your thing, you’ll love these Paleo Chocolate Chip Cookies. Make sure you tag me on Instagram when you make them @bakeritablog! I can’t wait to see your batch 😋
Want more cookie recipes?
Gluten-Free Vegan Chocolate Crinkle Cookies
You’ll want to make a double batch of these u003cstrongu003eGluten-Free Vegan Chocolate Crinkle Cookiesu003c/strongu003e – one for you, and one to share! These paleo-friendly cookies are perfect for the holidays and come together quickly.
Chewy Miso Chocolate Chip Cookies
These Gluten-Free u0026amp; Vegan Miso Chocolate Chip Cookies will make your mouth water! The addition of miso to the cookies adds such a delicious, subtle umami flavor that will have everyone wondering what exactly is making these cookies so extra delicious!
Chewy Gluten-Free Vegan Sugar Cookies
These Chewy Gluten-Free Vegan Sugar Cookies are quick and easy to make with just eight ingredients! They’re soft, chewy, and absolutely delightful. Perfect for the holidays, or whenever a sugar cookie craving strikes.

Paleo Chocolate Chip Cookies
Ingredients
- ½ cup (100g) refined coconut oil, softened, similar in texture to softened butter, use refined coconut oil if you want no coconut flavor
- ⅔ cup (96g) coconut sugar, any granulated sugar will work here
- 1 large egg or flax egg, room temperature or for vegan/to eat the dough, use a flax egg: mix 1 tablespoon flax meal + 2.5 tablespoons water and let gel for 10 minutes before using
- 1 teaspoon pure vanilla extract
- ½ teaspoon baking soda
- ½ teaspoon sea salt
- 2¼ cups (220g) blanched almond flour
- 1 cup (6 oz) chopped dark chocolate, or chocolate chips
- Flaky sea salt, to sprinkle on top, optional
Instructions
- Mix together the coconut oil and coconut sugar until smooth. Add the egg or flax egg and vanilla extract and stir until smooth.½ cup (100g) refined coconut oil, ⅔ cup (96g) coconut sugar, 1 large egg or flax egg, 1 teaspoon pure vanilla extract
- Add the almond flour, salt, and baking soda to the wet ingredients. Mix until well incorporated. Fold in the chopped chocolate.½ teaspoon baking soda, ½ teaspoon sea salt, 2¼ cups (220g) blanched almond flour, 1 cup (6 oz) chopped dark chocolate
- Cover and refrigerate for at least an hour (or up to 48 hours). You don’t NEED to refrigerate the dough if you don’t have time, but it’s recommended for the best flavor and texture.
- When you're ready to bake, preheat the oven to 350ºF. Use a cookie scoop to form cookies and place on a parchment lined baking sheet; press down slightly. Sprinkle with flaky sea salt if desired. Bake for about 10 or until just beginning to turn golden brown around the edges.Flaky sea salt
- Store leftover cookies in an airtight container at room temperature or in the refrigerator up to 3 days.
Notes
- To keep completely paleo, make your own chocolate or use Santa Barbara Chocolate’s Coconut Sugar Sweetened Dark Chocolate (code BAKERITA will get you 10% off), Hu Kitchen Chocolate Bars (code BAKERITA will get you 15% off), or Eating Evolved Chocolate Bars.




These cookies are amazing. I have been paleo for a few years now and have tried many cookie and baked good recipes around the web. I have to say Rachel you truly have a gift and are an amazing baker! I made these cookies the other day and they only lasted a day in my house. I made your chocolate chunks and they are so delicious. I like them better than the enjoy life because they use sweetener of my choice. Thank you so much for sharing your amazing recipes with us. I look forward to trying many many more recipes. You truly have a special gift! It says a lot when people eat your baked goods and don’t know they are paleo. Shhh…. our little secret. Happy holidays.
These don’t taste good at all. too much coconut sugar.
Hi S – sorry you didn’t enjoy them. You can try cutting down on the coconut sugar next time if you don’t have much of a sweet tooth!
These were amazing! Do you have the nutritional info on the cookies? Thanks
Hi Jess – so glad you like them! I don’t have the nutritional info, but you can calculate it here: myfitnesspal.com/recipe/calculator
I love these cookies!! I was wondering if you had the nutrition facts available for them!?
So glad you like them Kristina! I haven’t calculated them because it can vary based on the specific brand of ingredients you use, but you can calculate them here: http://www.myfitnesspal.com/recipe/calculator
Can I use regular AP Flour ?
You certainly can – just sub it 1:1. Enjoy!
I made these wonderful cookies with 1/2 c. mini Nestle chocolate chips. I did let them rest in the frig for 1 hour, then made my little mounds ( with a smallish ice cream scoop) on a 1/4 sheet pan…obviously I placed them too close. Well…they joined together making one rectangular cookie! :)
They did not rise of consequence, but I’m not complaining since they tasted excellent and they were the treat I was seeking. Had never used coconut sugar and it was surprisingly good. Is it truly Paleo? It seemed a bit more sweet than the honey and agave I have used prior in muffins so that was another plus. I’m pleased I happened onto your web site and am now a subscriber. Thanks for these great cookies!
So happy to hear you enjoyed the cookies, Jane! Coconut sugar is one of my favorites, and has a very low glycemic index so it doesn’t spike your blood sugar too much. It is a bit sweet, so you can definitely cut down on the sugar next time you make them if you taste buds prefer. Thanks so much for subscribing, I hope you find lots of recipes here to love.
Hi Rachel! The cookies sound and look amazing! I’m just wondering though – is your coconut oil in solid or liquid form at room temperature? It’s pretty hot where I am, and the coconut oil is usually in liquid form. Would that affect the recipe?
Hi Cheryl – I use the coconut oil when it’s solid, but kind of soft. I’d recommend putting in the fridge for a bit before using to get it similar to the consistency of softened butter before using.
Ah-mazing recipe! Should these be stored at room temperature or in the fridge?
Either will be fine – they’ll keep a little longer in the fridge though. So glad you like them Colleen!
Congrats to you for finishing college! I’m wishing you many wonderful opportunities in the months ahead once you stop celebrating! This recipe is trending on Pinterest and I can’t wait to try it for the Paleos in my life.
They sound amazing with the coconut sugar, can’t wait to try it out.