These Gluten-Free & Vegan Miso Chocolate Chip Cookies will make your mouth water! The addition of miso to the cookies adds such a delicious, subtle umami flavor that will have everyone wondering what exactly is making these cookies extra tasty.

I’m a pretty major cookie monster. Not a week goes by where I don’t make some sort of gluten-free cookie or vegan cookie. I simply can’t get enough, and I almost always have some sort of cookie dough in the fridge. I also have an entire chapter dedicated to cookies in my cookbook! So, you could say I’m pretty into cookies.
I’m always excited to add a new favorite to the list, and these miso cookies immediately shot to the top of the favorites list as soon as I took a bite. You may be wondering why the heck someone would add miso to cookies, and let me tell you: you want to try it.

Why add miso to chocolate chip cookies?
Adding miso to cookies is an unexpectedly delicious addition. Miso, a traditional Japanese ferment made with soybeans, has a distinctly delicious savory, umami flavor. You likely know it from things like miso soup. But it also works so well as a salt substitute in these cookies. Miso also pairs exceptionally well with dark chocolate.
I use a miso that I got at the Hollywood Farmer’s Market, from the company Omiso. It’s a small-batch, local miso, but you can absolutely use one from the grocery store. I recommend using light-colored miso, like white or yellow, which has a more mild flavor than the bolder red miso.
It adds a little something something you can’t quite put your finger on but is truly exceptional. It’s one of those you have to try it to believe it kind of things. Miso in baked goods has been trendy for a few years now, so I’m not the first to come up with this idea (and unfortunately I don’t know who is), but I can’t believe it took me so long to try it!

Do they need to be vegan?
Nope! I prefer making vegan cookies because I follow a primarily plant-based diet…and because without eggs in the dough, you can eat the raw dough 😜 YUM! But if you don’t follow a vegan diet, you can absolutely make these with a regular egg. You can also swap the coconut oil for butter if preferred.
Can I freeze these cookies for later?
Yes, absolutely. They can be frozen after baking, but I prefer to freeze the cookie dough so you can have freshly baked miso cookies on demand.
- Scoop cookie dough balls onto a baking sheet and place in the freezer until firm, about 1 hour.
- Once frozen, transfer to a freezer-safe zip bag. Freeze for up to 6 months (though they’re best before 3 months).
- When you’re ready to bake, you can bake straight from frozen, but add an extra minute or two to the baking time.

Want more delicious cookies?!
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Miso Chocolate Chip Cookies
Ingredients
- ½ cup (100g) refined coconut oil, softened, similar in texture to softened butter, can also use butter (vegan or dairy both work)
- ⅔ cup (96g) coconut sugar
- 1½ tablespoons white miso paste, or other light miso
- 1 large egg or flax egg, room temperature or for vegan/to eat the dough, use a flax egg: mix 1 tablespoon flax meal + 2.5 tablespoons water and let gel for 10 minutes before using
- 1 teaspoon pure vanilla extract
- ½ teaspoon baking soda
- 2¼ cups (220g) blanched almond flour
- 1 cup (6 oz) dark chocolate chips, I used Raaka Maple Dark Chocolate Discs
- Flaky sea salt, to sprinkle on top, optional
Instructions
- Mix together the coconut oil, coconut sugar, and miso paste until smooth. Add the egg or flax egg and vanilla extract and stir until smooth.½ cup (100g) refined coconut oil, ⅔ cup (96g) coconut sugar, 1½ tablespoons white miso paste, 1 large egg or flax egg, 1 teaspoon pure vanilla extract
- Add the almond flour and baking soda to the wet ingredients. Mix until well incorporated. Fold in the chocolate.½ teaspoon baking soda, 2¼ cups (220g) blanched almond flour, 1 cup (6 oz) dark chocolate chips
- Cover and refrigerate for at least an hour (or up to 48 hours). You don’t NEED to refrigerate the dough if you don’t have time, but it’s recommended for the best flavor and texture.
- When you’re ready to bake, preheat the oven to 350ºF. Use a cookie scoop to form cookies and place on a parchment-lined baking sheet; press down slightly. Sprinkle with flaky sea salt if desired. Bake for about 10 or until just beginning to turn golden brown around the edges.Flaky sea salt
- Store leftover cookies in an airtight container at room temperature or in the refrigerator up to 3 days.
Went through a bunch of recipes to zero in on this one. And it didn’t disappoint! Easily the best batch of cookies I’ve ever made! Used regular flour in this batch, and swapped coconut sugar for regular unrefined sugar (we call it khand sugar in India). Planning next batch with almond flour and jaggery powder, fingers crossed!
Thank you so much
Wow, such a great compliment, thanks so much for the feedback! Sounds fabulous.
Made the swap with almond flour and jaggery powder – wasn’t as tasty tbh :(
Quick question – will the recipe remain as is if I swap regular butter for browned butter?
Hi Sudhanshu, I’m not super familiar with jaggery to know if that would be a good swap, but each swap comes with risks of it not turning out as well since that’s not how it was tested! Brown butter should be fine, but definitely refrigerate it to solidify it back to softened butter texture before using in the recipe.